中文摘要
N7-甲基鸟苷(m7G)修饰在表观遗传学中对转录后基因表达的调控具有重要意义。长链非编码RNA(lncRNA)已被证明在癌症进展中发挥关键作用。m7G相关lncRNA可能参与胰腺癌(PC)的进展,尽管其潜在调控机制仍不清楚。
我们从TCGA和GTEx数据库获取了RNA序列转录组数据及相关临床信息。通过单因素和多因素Cox比例风险分析,构建了一个具有预后价值的十二个m7G相关lncRNA风险模型。使用受试者工作特征曲线分析和Kaplan-Meier分析对模型进行了验证。在体外验证了m7G相关lncRNA的表达水平。敲低SNHG8增加了PC细胞的增殖和迁移。鉴定高、低风险组之间的差异表达基因,用于基因集富集分析、免疫浸润和潜在药物探索。
我们为PC患者构建了一个m7G相关lncRNA预测风险模型。该模型具有独立预后意义,并提供了精确的生存预测。该研究使我们更好地了解PC中TIL(肿瘤浸润淋巴细胞)的调控。m7G相关lncRNA风险模型可作为PC患者的精确预后工具,并提示潜在的治疗靶点。
展开英文摘要原文
N7-Methylguanosine (m7G) modification holds significant importance in regulating posttranscriptional gene expression in epigenetics. Long non-coding RNAs (lncRNAs) have been demonstrated to play a crucial role in cancer progression. m7G-related lncRNA may be involved in the progression of pancreatic cancer (PC), although the underlying mechanism of regulation remains obscure.
We obtained RNA sequence transcriptome data and relevant clinical information from the TCGA and GTEx databases. Univariate and multivariate Cox proportional risk analyses were performed to build a twelve-m7G-associated lncRNA risk model with prognostic value. The model was verified using receiver operating characteristic curve analysis and Kaplan-Meier analysis.
The expression level of m7G-related lncRNAs in vitro was validated. Knockdown of SNHG8 increased the proliferation and migration of PC cells. Differentially expressed genes between high- and low-risk groups were identified for gene set enrichment analysis, immune infiltration, and potential drug exploration.
We conducted an m7G-related lncRNA predictive risk model for PC patients. The model had independent prognostic significance and offered an exact survival prediction. The research provided us with better knowledge of the regulation of tumor-infiltrating lymphocytes in PC. The m7G-related lncRNA risk model may serve as a precise prognostic tool and indicate prospective therapeutic targets for PC patients.
论文信息
- 作者
- Lu J、Yang P、Yu L、Xie N、Wu Y、Li B
- 单位
- Department of Gastroenterology, Shanghai Key Laboratory of Pancreatic Diseases, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 201620, China.China
- 期刊
- Diagnostics (Basel, Switzerland)2023 May 11