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TCR-NK 细胞的转录组学特征揭示与 CD3ζ过表达相关的挑战

英文原题:Transcriptomic Characterization of TCR-NK Cells Reveals Challenges Associated with CD3ζ Overexpression.

PubMed 2026/09/08(内容时间) Turk J Haematol Q3 · IF 1.6(JCR 2025)

研究概要

CD3ζ过表达在TCR-NK细胞工程中并非中性修饰。它与广泛的转录重塑和激活相关信号变化有关,这可能为先前观察到的非特异性活性增加提供分子背景。这些发现支持TCR-NK工程策略,即保留内源性CD3ζ调控,同时仅引入功能性TCR表达所需的缺失CD3δγε组分。

研究思路结论见上方概要

TCR工程化NK细胞代表了一种有前景的策略,能够靶向细胞内肿瘤抗原,同时克服TCR工程化T细胞固有的TCR α/β链错配风险。既往研究表明,TCR-NK细胞中CD3ζ过表达并未改善抗原特异性细胞毒性,反而增加了非特异性背景反应性。本研究旨在通过检测工程化NK-92细胞的转录组谱,探讨与这一表型相关的分子改变。

分析了表达酪氨酸酶特异性TCR的野生型和基因修饰NK-92细胞系,这些细胞系有或无CD3ζ过表达。随后进行批量RNA测序,并进行差异基因表达分析、层次聚类、多维标度和通路富集分析。通过流式细胞术评估CD28表面表达,并在CD3/CD28刺激后通过western blotting评估激活相关信号反应。

过表达CD3ζ的NK-92细胞形成了独特的转录组聚类,并表现出更广泛的基因表达变化。单独表达CD3δγε或与酪氨酸酶特异性TCR联合表达时,与空载体对照相比,转录水平的差异相对有限,而CD3ζ的引入使富集通路向淋巴细胞活化、细胞毒性和PI3K-AKT相关信号传导方向偏移。过表达CD3ζ的细胞还表现出CD28表面表达增加以及磷酸化模式改变,其中最显著的是在CD3/CD28刺激下涉及AKT的变化。

展开英文摘要原文

OBJECTIVE: TCR-engineered NK cells represent a promising strategy for targeting intracellular tumor antigens while overcoming the risk of TCR alpha/beta chain mispairing inherent to TCR-engineered T cells. Previous work showed that CD3ζ overexpression in TCR-NK cells did not improve antigen-specific cytotoxicity and instead increased non-specific background reactivity. This study aims to investigate the molecular alterations associated with this phenotype by examining the transcriptomic profile of engineered NK-92 cells. MATERIALS AND METHODS: Wild-type and genetically modified NK-92 cell lines expressing a tyrosinase-specific TCR in the presence or absence of CD3ζ overexpression were analyzed. Bulk RNA sequencing was followed by differential gene-expression analysis, hierarchical clustering, multidimensional scaling, and pathway enrichment analysis. CD28 surface expression was assessed by flow cytometry, and activation-associated signaling responses were evaluated by western blotting after CD3/CD28 stimulation. RESULTS: CD3ζ-overexpressing NK-92 cells formed distinct transcriptomic clusters and displayed broader gene expression changes. Expression of CD3δγε alone or in combination with tyrosinase-specific TCR resulted in comparatively limited transcriptional divergence from the empty-vector control, whereas CD3ζ inclusion shifted enriched pathways toward lymphocyte activation, cytotoxicity, and PI3K-AKT-related signaling. CD3ζ- overexpressing cells also exhibited increased CD28 surface expression and altered phosphorylation patterns, most notably involving AKT in response to CD3/CD28 stimulation. CONCLUSION: CD3ζ overexpression is not a neutral modification in TCR-NK cell engineering. It is associated with broad transcriptional remodeling and activation-associated signaling changes that may provide a molecular context for the previously observed increase in non-specific activity. These findings support TCR-NK engineering strategies that preserve endogenous CD3ζ regulation while introducing only the missing CD3δγε components required for functional TCR expression.

论文信息

作者
Sütlü T、Çelik E、Çakıcı B、Özarı S、Aras M
第一作者单位
Acıbadem University Faculty of Engineering and Natural Sciences, Department of Molecular Biology and Genetics, İstanbul, Türkiye.Turkey
通讯作者单位
Türkiye Cancer Institute, Health Institutes of Türkiye, Ankara, Türkiye.Turkey
期刊
Turkish journal of haematology : official journal of Turkish Society of Haematology2026 Sep 8
原文标识
PubMed 42706722 · DOI 10.4274/tjh.galenos.2026.93902