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基于单细胞测序的预后模型揭示 HLA-DRA、NPC2 和 PRPF38B 是非小细胞肺癌中的免疫调节肿瘤抑制因子

英文原题:A single-cell sequencing-based prognostic model reveals HLA-DRA, NPC2, and PRPF38B as immune-regulatory tumor suppressors in non-small cell lung cancer.

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A single-cell sequencing-based prognostic model reveals HLA-DRA, NPC2, and PRPF38B as immune-regulatory tumor suppressors in non-small cell lung cancer.

PubMed 2026/07/23(内容时间) Front Cell Dev Biol Q1 · IF 5.3(JCR 2025)

研究概要

本研究建立了基于TIL的NSCLC预后风险模型,并确定HLA-DRA、NPC2和PRPF38 B为具有肿瘤抑制功能的潜在免疫调节治疗靶点,为NSCLC精准免疫治疗提供了新见解。

研究思路结论见上方概要

非小细胞肺癌(NSCLC)是最常见的肺癌亚型,也是癌症相关死亡的主要原因,因为早期无症状且5年生存率低,而TIL(肿瘤浸润淋巴细胞)(TILs)在肿瘤微环境(TME)中对NSCLC进展和预后起着关键但尚不明确的作用。

我们分析了来自GEO(GSE148466)的单细胞RNA测序数据、来自TCGA的NSCLC相关数据以及来自GEO(GSE50081)的基因表达数据。使用LASSO回归构建了一个9基因TIL相关风险评分模型(HLA-DRA、NPC2、PRPF38B、PABPC1、ENO1、ANXA2、LGALS1、S100A10、SRGN),并通过Kaplan-Meier和ROC分析及外部验证评估其预后价值。使用TISIDB分析免疫浸润和调控因子,通过GSVA和GSEA分析通路关联,并使用RT-qPCR、Western blotting和共培养实验验证关键基因(HLA-DRA、NPC2、PRPF38B)的功能作用。

TIL在吸烟和非吸烟NSCLC样本中均丰富存在。9基因风险模型有效地根据生存对患者进行分层,高风险患者表现出更差的结局以及富集的促肿瘤免疫特征和通路。高风险评分与M0巨噬细胞增加、活化NK细胞以及免疫检查点升高相关。HLA-DRA、NPC2和PRPF38 B的过表达抑制了NSCLC细胞增殖、迁移和侵袭,同时增强凋亡并抑制M2巨噬细胞极化。

展开英文摘要原文

BACKGROUND: Non-small cell lung cancer (NSCLC) is the most common lung cancer subtype and a leading cause of cancer-related mortality due to asymptomatic early stages and poor 5-year survival, and tumor-infiltrating lymphocytes (TILs) play a pivotal but poorly defined role in NSCLC progression and prognosis within the tumor microenvironment (TME). METHODS: We analyzed single-cell RNA sequencing data from GEO (GSE148466), NSCLC-related data from TCGA, and gene expression data from GEO (GSE50081). A 9-gene TIL-related risk score model (HLA-DRA, NPC2, PRPF38B, PABPC1, ENO1, ANXA2, LGALS1, S100A10, SRGN) was constructed using LASSO regression, with its prognostic value assessed via Kaplan-Meier and ROC analyses and external validation. Immune infiltration and regulatory factors were analyzed using TISIDB, pathway associations via GSVA and GSEA, and functional roles of key genes (HLA-DRA, NPC2, PRPF38 B) validated using RT-qPCR, Western blotting, and co-culture assays. RESULTS: TILs were abundant in both smoking and non-smoking NSCLC samples. The 9-gene risk model effectively stratified patients by survival, with high-risk patients showing poorer outcomes and enriched tumor-promoting immune features and pathways. High-risk scores were associated with increased M0 macrophages, activated NK cells, and elevated immune checkpoints. Overexpression of HLA-DRA, NPC2, and PRPF38 B inhibited NSCLC cell proliferation, migration, and invasion, while enhancing apoptosis and suppressing M2 macrophage polarization. CONCLUSION: This study establishes a TIL-based prognostic risk model for NSCLC and identifies HLA-DRA, NPC2, and PRPF38 B as potential immune-regulatory therapeutic targets with tumor-suppressive functions, providing new insights for NSCLC precision immunotherapy.

论文信息

作者
Su W、Wu Y、He Q、Zhou L、Zhou J
单位
Department of Respiratory and Critical Care Medicine, The Third Affiliated Hospital of Soochow University, The First People's Hospital of Changzhou, Changzhou, Jiangsu Province, China.China
期刊
Frontiers in cell and developmental biology2026
原文标识
PubMed 42564225 · DOI 10.3389/fcell.2026.1835398