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多组学分析将 DNA2 定位在泛癌中基因组完整性程序与肿瘤行为的交界处

英文原题:Multi-omics analysis positions DNA2 at the interface of genome integrity programs and tumor behavior in pan-cancer.

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Multi-omics analysis positions DNA2 at the interface of genome integrity programs and tumor behavior in pan-cancer.

PubMed 2026/06/17(内容时间) Funct Integr Genomics Q2 · IF 4(JCR 2025)

研究概要

在子宫内膜癌中,观察到的遗传变化频率最高(约7%)。

中文摘要

DNA2协调包括细胞周期进程在内的关键维持过程;然而,其异常活性已被认为与癌基因诱导的复制压力下癌细胞存活有关。迄今为止,尚未对DNA2进行全面的泛癌研究。利用TCGA队列和补充的公共数据库,我们执行了首个DNA2的泛癌多组学研究,检查了肿瘤图谱中的转录组、基因组变异、生存、免疫浸润、单细胞功能状态、蛋白质-蛋白质相互作用富集和药物基因组学药物反应数据。与匹配的正常组织相比,DNA2在17种肿瘤中显著过表达。在子宫内膜癌中,观察到遗传改变的最高频率(约7%)。生存的单变量分析显示,DNA2表达升高与恶性肿瘤中更差的总生存相关,包括肾上腺皮质癌(HR = 17.06)和间皮瘤(HR = 2.67)。单细胞组学揭示了DNA2表达与涵盖DNA损伤、血管生成和增殖的功能注释之间的肿瘤特异性相关性。此外,根据免疫景观分析,在多种肿瘤中,DNA2表达始终与调节性T细胞亚型正相关,但与NK细胞和细胞毒性T细胞负相关。根据GDSC2数据集的药物基因组学分析,表达较高DNA2的肿瘤细胞对Tozasertib和Daporinad更敏感。根据富集研究,DNA2处于几个相互关联模块的核心,包括瓣片加工、端粒酶延伸和细胞周期进程。这些发现表明DNA2是癌症中的一个治疗脆弱点,一个具有治疗反应、预后和免疫意义的背景依赖性生物标志物。

展开英文摘要原文

DNA2 coordinates essential maintenance processes, including cell-cycle progression; however, its aberrant activity has been implicated in cancer cell survival under oncogene-induced replication stress. To date, no comprehensive pan-cancer investigation of DNA2 has been conducted. Employing TCGA cohorts and complementary public databases, we executed the first pan-cancer multi-omics study of DNA2, examining transcriptomic, genomic variations, survival, immune infiltration, single-cell functional states, protein-protein interaction enrichment, and pharmacogenomic drug-response data across tumor profiles. DNA2 was considerably overexpressed in 17 tumors compared with matching normal tissues. In endometrial cancer, the highest frequency of genetic changes (~ 7%) was observed. Univariable analyses of survival showed that elevated DNA2 expression was related to worse overall survival in malignancies, including adrenocortical carcinoma (HR = 17.06) and mesothelioma (HR = 2.67). Single-cell omics revealed a tumor-specific correlation between DNA2 expression and functional annotations that encompass DNA damage, angiogenesis, and proliferation. Moreover, DNA2 expression was consistently positively associated with regulatory T-cell subtypes, but negatively related with NK cells, and cytotoxic T cells in multiple tumors as per immune landscape profiling. According to the pharmacogenomic analysis from GDSC2 dataset, tumor cells that express higher DNA2 are more sensitive to Tozasertib, and Daporinad. DNA2 is at the core of several interrelated modules, including flap processing, telomerase extension, and cell-cycle progression, according to the enrichment study. These findings have suggested DNA2 as a therapeutic vulnerability in cancer, a context-dependent biomarker with implications for treatment response, prognosis, and immunity.

论文信息

作者
Pandit D、Dhillon A、Chakrabarty S、Bilachi RS
第一作者单位
Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, Karnataka, 576104, India.India
通讯作者单位
Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, Karnataka, 576104, India. ravindranath.bs@manipal.edu.India
期刊
Functional & integrative genomics2026 Jun 17
原文标识
PubMed 42307783 · DOI 10.1007/s10142-026-01941-w