研究概要
肝母细胞瘤(HB)是一种罕见且侵袭性强的儿童肝脏肿瘤,病因复杂。
中文摘要
肝母细胞瘤(HB)是一种罕见且侵袭性强的儿童肝脏肿瘤,病因复杂。尽管坏死性凋亡已被认为与多种癌症有关,但其在HB中的作用仍不明确。本研究旨在利用整合生物信息学和机器学习方法,探讨坏死性凋亡相关基因及免疫景观在HB中的参与情况。整合并分析了来自两个独立HB数据集的基因表达数据。识别了差异表达基因(DEGs)和坏死性凋亡相关DEGs(NR-DEGs),随后进行功能富集分析。采用机器学习算法识别枢纽NR-DEGs。利用单样本基因集富集分析(ssGSEA)研究免疫景观和枢纽NR-DEGs。共识别出1330个上调的和1061个下调的共同DEGs。识别出5个上调和14个下调的NR-DEGs,主要富集于免疫相关通路。四个枢纽NR-DEGs(SLC25A6、HSP90AB1、USP21和CAMK2B)被确定为HB的潜在诊断生物标志物。免疫浸润分析显示,HB患者中CD56brightNK 细胞和γδ T细胞比例升高,其与枢纽NR-DEG表达显著相关。ssGSEA表明,枢纽NR-DEGs调控HB中的多种细胞过程,包括细胞周期进程、RNA代谢、蛋白质合成和病毒感染反应。本研究揭示了坏死性凋亡相关基因和改变的免疫浸润参与HB发病机制,提供了新的见解和潜在治疗靶点。
展开英文摘要原文
Hepatoblastoma (HB) is a rare and aggressive pediatric liver tumor with complex etiology. Although necroptosis has been implicated in various cancers, its role in HB remains unclear. This study aimed to investigate the involvement of necroptosis-related genes and immune landscape in HB using integrative bioinformatics and machine learning approaches. Gene expression data from two independent HB datasets were integrated and analyzed. Differentially expressed genes (DEGs) and necroptosis-related DEGs (NR-DEGs) were identified, followed by functional enrichment analysis. Machine learning algorithms were employed to identify hub NR-DEGs. The immune landscape and hub NR-DEGs were investigated using single-sample gene set enrichment analysis (ssGSEA). A total of 1330 upregulated and 1061 downregulated common DEGs were identified. Five upregulated and fourteen downregulated NR-DEGs were identified, which were mainly enriched in immune-related pathways. Four hub NR-DEGs (SLC25A6, HSP90AB1, USP21, and CAMK2B) were identified as potential diagnostic biomarkers for HB. Immune infiltration analysis revealed elevated proportions of CD56bright natural killer cells and gamma delta T cells in HB patients, which significantly correlated with hub NR-DEG expression. ssGSEA indicated that hub NR-DEGs regulate various cellular processes, including cell cycle progression, RNA metabolism, protein synthesis, and viral infection response in HB. This study reveals the involvement of necroptosis-related genes and altered immune infiltration in HB pathogenesis, providing novel insights and potential therapeutic targets.
论文信息
- 作者
- Qiao W、Liu Y、Kong Q、Tao X
- 第一作者单位
- Department of Clinical Laboratory, Central Hospital of Dalian University of Technology, Dalian Municipal Central Hospital, Dalian, Liaoning 116033, China.China
- 通讯作者单位
- Department of Pathology, Central Hospital of Dalian University of Technology, Dalian Municipal Central Hospital, Dalian, Liaoning 116033, China.China
- 文献类型
- 非美国政府资助研究
- 期刊
- Biointerphases2025 May 1