研究概要
JAK1是多种致癌通路的关键调控因子,是一个备受关注的靶点,其在免疫细胞和TIL(肿瘤浸润淋巴细胞)(TILs)中的表达与乳腺癌的良好预后相关。
中文摘要
JAK1是多种致癌通路的关键调控因子,是一个备受关注的靶点,其在免疫细胞和TIL(肿瘤浸润淋巴细胞)(TILs)中的表达与乳腺癌良好预后相关。JAK1通过ERBB2受体酪氨酸激酶信号激活IL-6,并促进乳腺癌细胞中的转移性癌症和STAT3激活。因此,靶向乳腺癌中的JAK1正被探索作为一种潜在的治疗策略。本研究采用全面的计算机模拟方法,从Life chemicals数据库中鉴定选择性JAK1抑制剂。首先,我们利用抗癌聚焦库,针对JAK1蛋白进行分子对接筛选。从对接中选取排名前10的化合物进行交叉对接,以评估对JAK1靶点的选择性。检查Lipinski的RO5以排除违反规则的化合物。分别通过Protox-II服务器、PASS服务器和cDFT分析预测所鉴定最佳化合物的毒性、生物活性和反应性。进行MD模拟以检查顶级先导化合物的稳定性和动态行为,包括配体-受体复合物的长期稳定性及任何构象变化。最后,采用MM/PBSA方法确定蛋白质-配体复合物的结合自由能。我们的计算机模拟方法产生了一组有前景的化合物F2638-0133、F3408-0020和F5833-7435,具有选择性靶向JAK1的潜力,JAK1是乳腺癌进展中的关键参与者。对接、模拟和MM/PBSA结果与标准药物abrocitinib进行了比较。所鉴定的化合物与标准药物相比,展现出良好的结合相互作用、电子特性和稳健的稳定性特征,使其成为有前景的先导化合物,有待进一步的实验验证。
展开英文摘要原文
JAK1, a key regulator of multiple oncogenic pathways, is a sought-out target, and its expression in immune cells and tumour-infiltrating lymphocytes (TILs) is associated with a favorable prognosis in breast cancer. JAK1 activates IL-6 via ERBB2 receptor tyrosine kinase signalling and promotes metastatic cancer and STAT3 activation in breast cancer cells. Hence, targeting JAK1 in breast cancer is being explored as a potential therapeutic strategy. A comprehensive in silico approach was utilised in this study to identify selective JAK1 inhibitors from the Life chemicals database. First, we utilised an anticancer focussed library and performed molecular docking to screen against JAK1 protein. The top 10 compounds from docking were taken for cross-docking, to assess the selectivity towards JAK1 target. Lipinski's RO5 was checked for eliminating the compounds that violate rules. Toxicity, biological activity and reactivity for the identified best compounds were predicted by Protox-II server, PASS server and cDFT analysis respectively. MD simulations were carried out to examine the stability and dynamic behaviour of the top leads, including the long-term stability of the ligand-receptor complex and any conformational changes. Lastly, the MM/PBSA method was used to determine the binding free energy of the protein-ligand complex. Our in silico approach has yielded a promising set of compounds F2638-0133, F3408-0020 and F5833-7435 with the potential to selectively target JAK1, a critical player in breast cancer progression. The docking, simulation and MM/PBSA results were compared with standard drug abrocitinib. Identified compounds exhibit favorable binding interactions, electronic properties and robust stability profiles compared to standard drug, making them promising leads for further experimental validation.
论文信息
- 作者
- Sathish S、Sohn H、Madhavan T
- 第一作者单位
- Computational Biology Lab, Department of Genetic Engineering, School of Bioengineering, SRM Institute of Science and Technology, SRM Nagar, Kattankulathur, 603203, Tamil Nadu, India.India
- 通讯作者单位
- Computational Biology Lab, Department of Genetic Engineering, School of Bioengineering, SRM Institute of Science and Technology, SRM Nagar, Kattankulathur, 603203, Tamil Nadu, India. thiru.murthyunom@gmail.com.India
- 期刊
- Applied biochemistry and biotechnology2025 Apr