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多组学揭示局部晚期胃癌和胃食管结合部癌在新辅助免疫治疗和化疗后的肿瘤微环境重塑

英文原题:Multiomics reveals tumor microenvironment remodeling in locally advanced gastric and gastroesophageal junction cancer following neoadjuvant immunotherapy and chemotherapy.

PubMed 2024/12/09(内容时间) J Immunother Cancer Q1 · IF 11.7(JCR 2025)

研究概要

我们的研究强调了肿瘤免疫微环境中的动态变化在预测新辅助联合免疫化疗疗效中的关键作用。我们检查了MPR/非MPR组之间的差异,揭示了免疫应答和免疫抑制的潜在机制。除了增强细胞毒性免疫应答外,特异性靶向Treg细胞可能对提高治疗结局至关重要。

研究思路结论见上方概要

围手术期化疗是局部晚期胃癌和胃食管结合部癌患者的标准治疗。近期证据表明,加入程序性细胞死亡蛋白1(PD-1)抑制剂可增强治疗效果。然而,应答和耐药的机制在很大程度上仍未明确。详细的多组学研究对于阐明这些机制至关重要。

我们对30例入组研究者发起的2期临床试验(NCT04908566)的患者进行了全外显子组测序、全转录组测序、多重免疫荧光和单细胞RNA测序,样本为匹配的治疗前和治疗后样本。所有患者均接受新辅助PD-1抑制剂联合化疗。主要病理缓解(MPR)定义为治疗后残留存活肿瘤细胞不超过10%。

治疗前,非MPR组肿瘤实质和间质中CD3+T细胞的阳性比例均显著高于MPR组(分别为p=0.042和p=0.013)。采用最小绝对收缩和选择算子回归进行特征基因筛选,最终使用13个基因构建预测模型,用于识别术后MPR。该模型表现出完美的曲线下面积(AUC)为1.000(95% CI:1.000至1.000,p<0.001)。治疗后分析显示,MPR患者肿瘤间质中CD3+T细胞、CD8+T细胞和NK细胞显著增加。在肿瘤实质中,除CD8+T细胞和NK细胞显著增加外,还观察到巨噬细胞显著减少(均p<0.05)。重要的是,叉头框蛋白3(FOXP3),即调节性T细胞(Treg)的主要标志物,在MPR患者治疗期间显著下降。治疗后,非MPR组中FOXP3表达显著高于MPR组(p=0.0056)。此外,单细胞RNA测序分析证实,几乎所有Treg细胞均来源于非MPR组。

展开英文摘要原文

BACKGROUND: Perioperative chemotherapy is the standard of care for patients with locally advanced gastric and gastroesophageal junction cancer. Recent evidence demonstrated the addition of programmed cell death protein 1 (PD-1) inhibitors enhanced therapeutic efficacy. However, the mechanisms of response and resistance remain largely undefined. A detailed multiomic investigation is essential to elucidate these mechanisms. METHODS: We performed whole-exome sequencing, whole-transcriptome sequencing, multiplex immunofluorescence and single-cell RNA sequencing on matched pretreatment and post-treatment samples from 30 patients enrolled in an investigator-initiated Phase 2 clinical trial (NCT04908566). All patients received neoadjuvant PD-1 inhibitors in combination with chemotherapy. A major pathologic response (MPR) was defined as the presence of no more than 10% residual viable tumor cells following treatment. RESULTS: Before treatment, the positive ratio of CD3+T cells in both the tumor parenchyma and stroma was significantly higher in the non-MPR group compared with the MPR group (p=0.042 and p=0.013, respectively). Least absolute shrinkage and selection operator regression was employed for feature gene selection and 13 genes were ultimately used to construct a predictive model for identifying MPR after surgery. The model exhibited a perfect area under curve (AUC) of 1.000 (95% CI: 1.000 to 1.000, p<0.001). Post-treatment analysis revealed a significant increase in CD3+T cells, CD8+T cells and NK cells in the tumor stroma of MPR patients. In the tumor parenchyma, aside from a marked increase in CD8+T cells and NK cells, a notable reduction in macrophage was also observed (all p<0.05). Importantly, forkheadbox protein 3 (FOXP3), the principal marker for regulatory T cells (Treg) cells, showed a significant decrease during treatment in MPR patients. FOXP3 expression in the non-MPR group was significantly higher than in the MPR group (p=0.0056) after treatment. Furthermore, single-cell RNA sequencing analysis confirmed that nearly all Treg cells were derived from the non-MPR group. CONCLUSIONS: Our study highlights the critical role of dynamic changes within the tumor immune microenvironment in predicting the efficacy of neoadjuvant combined immunochemotherapy. We examined the disparities between MPR/non-MPR groups, shedding light on potential mechanisms of immune response and suppression. In addition to bolstering cytotoxic immune responses, specifically targeting Treg cells may be crucial for enhancing treatment outcomes.

论文信息

作者
Ji Z、Wang X、Xin J、Ma L、Zuo D、Li H、Su L、Lv X
第一作者单位
Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center for Cancer, Tianjin's Clinical Research Center for Cancer, Tianjin Key Laboratory of Digestive Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin, People's Republic of China.China
通讯作者单位
Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center for Cancer, Tianjin's Clinical Research Center for Cancer, Tianjin Key Laboratory of Digestive Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin, People's Republic of China liurui9003@163.com xymcdengting@126.com bayi@tjmuch.com.China
文献类型
II 期临床试验
期刊
Journal for immunotherapy of cancer2024 Dec 9
原文标识
PubMed 39653554 · DOI 10.1136/jitc-2024-010041