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阐明 S100A9 的泛肿瘤学全景:来自整合生物信息学和孟德尔随机化分析的预后与治疗推论

英文原题:Elucidating the pan-oncologic landscape of S100A9: prognostic and therapeutic corollaries from an integrative bioinformatics and Mendelian randomization analysis.

PubMed 2024/08/17(内容时间) Sci Rep Q1 · IF 4.9(JCR 2025)

研究概要

钙结合蛋白 S100A9 已成为肿瘤学中一个关键的生物分子参与者,涉及多种恶性肿瘤。

中文摘要

钙结合蛋白 S100A9 已成为肿瘤学中一个关键的生物分子参与者,涉及多种恶性肿瘤。这项全面的生物信息学研究超越了传统界限,探讨了 S100A9 在多种肿瘤实体中的预后和治疗潜力。利用广泛的生物信息学工具和公开可用的癌症基因组学数据库,如 TCGA,我们系统地检查了 S100A9 基因。我们的方法包括差异表达分析、突变负荷评估、蛋白质相互作用网络和生存分析。这一稳健的计算框架提供了 S100A9 在癌症生物学中作用的高分辨率视图。该研究细致地探索了 S100A9 的致癌方面,综合分析了其与多种肿瘤类型中预后、肿瘤突变负荷(TMB)、微卫星不稳定性(MSI)、DNA 甲基化和免疫细胞浸润的关系。本研究呈现了 S100A9 在一系列人类癌症中表达的全景视图,揭示了异质性表达格局。在 BLCA(膀胱尿路上皮癌)、CESC(宫颈鳞状细胞癌和宫颈内膜腺癌)、COAD(结肠腺癌)、ESCA(食管癌)和 GBM(多形性胶质母细胞瘤)等恶性肿瘤中检测到 S100A9 表达升高,而在 BRCA(乳腺浸润性癌)、HNSC(头颈部鳞状细胞癌)和 KICH(肾嫌色细胞癌)中观察到表达降低。这种差异表达模式表明 S100A9 在癌症生物学中的作用是多方面的且具有背景依赖性。在预后方面,S100A9 表达在不同癌症类型中与患者结局的相关性各不相同。此外,其表达与九种癌症类型中的TMB和MSI密切相关。对六种选定肿瘤——BRCA、CESC、KIRC(肾透明细胞癌)、LUSC(肺鳞状细胞癌)、SKCM(皮肤黑色素瘤);STAD(胃腺癌)——的详细检查显示,S100A9表达与大多数免疫细胞的浸润呈负相关,但与中性粒细胞、M1巨噬细胞和活化NK细胞呈正相关,突显了S100A9与肿瘤免疫环境之间复杂的相互作用。这一生物信息学综合分析认为S100A9在癌症进展中扮演重要角色,提供了有价值的预后见解。这些数据强调了S100A9作为预后生物标志物的实用性及其作为治疗靶点的潜力。其治疗意义深远,表明调节S100A9活性可能显著影响癌症管理策略。

展开英文摘要原文

The calcium-binding protein S100A9 has emerged as a pivotal biomolecular actor in oncology, implicated in numerous malignancies. This comprehensive bioinformatics study transcends traditional boundaries, investigating the prognostic and therapeutic potential of S100A9 across diverse neoplastic entities. Leveraging a wide array of bioinformatics tools and publicly available cancer genomics databases, such as TCGA, we systematically examined the S100A9 gene. Our approach included differential expression analysis, mutational burden assessment, protein interaction networks, and survival analysis. This robust computational framework provided a high-resolution view of S100A9's role in cancer biology. The study meticulously explored S100A9's oncogenic facets, incorporating comprehensive analyses of its relationship with prognosis, tumor mutational burden (TMB), microsatellite instability (MSI), DNA methylation, and immune cell infiltration across various tumor types. This study presents a panoramic view of S100A9 expression across a spectrum of human cancers, revealing a heterogeneous expression landscape. Elevated S100A9 expression was detected in malignancies such as BLCA (Bladder Urothelial Carcinoma), CESC (Cervical squamous cell carcinoma and endocervical adenocarcinoma), COAD (Colon adenocarcinoma), ESCA (Esophageal carcinoma), and GBM (Glioblastoma multiforme), while reduced expression was noted in BRCA (Breast invasive carcinoma), HNSC (Head and Neck squamous cell carcinoma), and KICH (Kidney Chromophobe). This disparate expression pattern suggests that S100A9's role in cancer biology is multifaceted and context-dependent. Prognostically, S100A9 expression correlates variably with patient outcomes across different cancer types. Furthermore, its expression is intricately associated with TMB and MSI in nine cancer types. Detailed examination of six selected tumors-BRCA, CESC, KIRC (Kidney renal clear cell carcinoma), LUSC (Lung squamous cell carcinoma), SKCM (Skin Cutaneous Melanoma); STAD (Stomach adenocarcinoma)-revealed a negative correlation of S100A9 expression with the infiltration of most immune cells, but a positive correlation with neutrophils, M1 macrophages, and activated NK cells, highlighting the complex interplay between S100A9 and the tumor immune environment. This bioinformatics synthesis posits S100A9 as a significant player in cancer progression, offering valuable prognostic insights. The data underscore the utility of S100A9 as a prognostic biomarker and its potential as a therapeutic target. The therapeutic implications are profound, suggesting that modulation of S100A9 activity could significantly impact cancer management strategies.

论文信息

作者
Chen Y、Wu Z、Yi X
第一作者单位
The First Hospital of Hunan University of Chinese Medicine, Changsha, 410007, Hunan, China.China
通讯作者单位
The First Hospital of Hunan University of Chinese Medicine, Changsha, 410007, Hunan, China. 1037603220@qq.com.China
期刊
Scientific reports2024 Aug 17
原文标识
PubMed 39154046 · DOI 10.1038/s41598-024-70223-x