← 返回前沿论文

肺腺癌预后性细胞死亡指数:基于转录组的十二种程序性细胞死亡模式基因综合分析

英文原题:Prognostic Cell Death Index for Lung Adenocarcinoma: A Comprehensive Transcriptome-Based Analysis of Twelve Programmed Cell Death Pattern Genes.

查看英文原题

Prognostic Cell Death Index for Lung Adenocarcinoma: A Comprehensive Transcriptome-Based Analysis of Twelve Programmed Cell Death Pattern Genes.

PubMed 2024/04/01(内容时间) Front Biosci (Landmark Ed) Q2 · IF 4.1(JCR 2025)

研究概要

基于PCD基因的CDI可作为LUAD的可靠预后工具,为肿瘤生物学、免疫反应和个体化治疗策略提供深刻见解。本研究强调了PCD机制在LUAD发病机制中的关键作用,并确定了潜在的治疗靶点。

研究思路结论见上方概要

肺腺癌(LUAD)是全球癌症死亡率的重要贡献者,其预后有限。本研究旨在利用12个程序性细胞死亡(PCD)模式基因,开发一种新的预后指标——细胞死亡指数(CDI),以预测LUAD患者的免疫浸润和预后。

我们收集了PCD相关基因,并在癌症基因组图谱(TCGA)-LUAD数据集中识别了预后PCD基因,并在临床蛋白质组肿瘤分析联盟(CPTAC)-LUAD队列中进行了严格验证。使用多变量Cox回归模型计算CDI。评估了功能富集和肿瘤微环境。进行了药物敏感性预测和列线图开发,以评估CDI的潜在价值。

结果显示,10个PCD基因(ERO1A、CDK5R1、TRIM6、DNASE2B、ITPRIP、MRGPRX2、FGA、NDUFA13、NLRP2和CD68)与LUAD预后显著相关。构建了CDI,其在预测患者生存方面表现出高准确性,在预后队列和验证队列中的C-index值分别为0.801和0.794。CDI还指示了生物学功能、肿瘤微环境和免疫细胞浸润的变化,包括中性粒细胞、活化肥大细胞、活化树突状细胞、M0巨噬细胞、静息NK 细胞、γδT细胞和活化记忆CD4+T细胞。此外,药物敏感性分析表明了潜在的靶向策略。

展开英文摘要原文

OBJECTIVE: Lung adenocarcinoma (LUAD) is a prominent contributor to global cancer mortality, characterized by constrained prognosis. This study aimed to develop a novel prognostic indicator, the Cell Death Index (CDI), utilizing twelve programmed cell death (PCD) pattern genes, to predict the immune infiltration and prognosis in LUAD patients. METHODS: We collected PCD-related genes and identified prognostic PCD genes in the Cancer Genome Atlas (TCGA)-LUAD dataset, and made rigorous validation in the Clinical Proteomic Tumor Analysis Consortium (CPTAC)-LUAD cohorts. CDI was calculated using a multivariable Cox regression model. Functional enrichment and tumor microenvironment were evaluated. Drug sensitivity prediction and nomogram development were performed to assess CDI's potential value. RESULTS: The results revealed 10 PCD genes ( ERO1A , CDK5R1 , TRIM6 , DNASE2B , ITPRIP , MRGPRX2 , FGA , NDUFA13 , NLRP2 , and CD68 ) significantly associated with LUAD prognosis. The CDI was constructed and showed high accuracy in predicting patient survival with C-index values of 0.801 and 0.794 in the prognosis cohort and validation cohort, respectively. CDI is also indicative of variations in biological functions, tumor microenvironment, and immune cell infiltration including neutrophils, activated mast cells, activated dendritic cells, M0 macrophages, resting natural killer cells, γδT cells, and activated memory CD4+T cells. Furthermore, drug sensitivity analysis indicated potential targeted strategies. CONCLUSIONS: The CDI, based on PCD genes, serves as a robust prognostic tool for LUAD, offering profound insights into tumor biology, immune response, and personalized treatment strategies. This study underscores the pivotal role of PCD mechanisms in LUAD pathogenesis and identifies potential therapeutic targets.

论文信息

作者
Chen F、Ma J、Hu S、Wu C、Chen S、Lin J
单位
Department of Thoracic and Cardiac Surgery, Longyan First Affiliated Hospital of Fujian Medical University, 364000 Longyan, Fujian, China.China
文献类型
非美国政府资助研究
期刊
Frontiers in bioscience (Landmark edition)2024 Apr 1
原文标识
PubMed 38682187 · DOI 10.31083/j.fbl2904135