研究概要
ADCY4 可作为预测 SCLC 中 BMs、分子和免疫特征的有前景的候选生物标志物。
中文摘要
小细胞肺癌(SCLC)脑转移预后极差。本研究结合加权基因共表达网络分析(WGCNA)和mfuzz算法,识别脑转移患者外周血中的潜在生物标志物。通过比较脑转移样本中显著差异表达的基因,我们确定ADCY4作为进一步研究靶点。随后根据ADCY4表达对表达模式进行mfuzz聚类,并识别出28个枢纽基因用于功能富集分析。通过与脑转移中的差异表达基因比较,开展蛋白质-蛋白质相互作用(PPI)网络分析。GABRE、NFE4和LMOD2在脑转移患者中高表达,且具有良好诊断效能。免疫浸润分析显示,SCLC脑转移可能与记忆B细胞、调节性T细胞、NK细胞活化、M0型巨噬细胞及树突状细胞活化相关。研究还使用prophytic分析ADCY4介导的抗肿瘤药物应答。总之,ADCY4可能成为预测SCLC脑转移及其分子和免疫特征的有前景候选生物标志物。PCR显示,ADCY4在NCI-H209和NCI-H526 SCLC细胞系中表达升高。体外实验确认,抗PD-1抗体处理后ADCY4表达显著下降,能量代谢因子的表达也显著改变。本研究揭示了ADCY4可能通过能量代谢相关通路介导SCLC不良预后的机制。
展开英文摘要原文
Brain metastasis (BMs) in small cell lung cancer (SCLC) has a very poor prognosis. This study combined WGCNA with the mfuzz algorithm to identify potential biomarkers in the peripheral blood of patients with BMs. By comparing the significantly differentially expressed genes present in BMs samples, we identified ADCY4 as a target for further study. Expression of ADCY4 was used to cluster mfuzz expression pattern, and 28 hub genes for functional enrichment. PPI network analysis were obtained by comparing with differentially expressed genes in BMs. GABRE, NFE4 and LMOD2 are highly expressed in patients with BMs and have a good diagnostic effect. Immunoinfiltration analysis showed that SCLC patients with BMs may be associated with memory B cells, Tregs, NK cell activation, macrophage M0 and dendritic cell activation. prophytic was used to investigate the ADCY4-mediated anti-tumor drug response. In conclusion, ADCY4 can be used as a promising candidate biomarker for predicting BMs, molecular and immune features in SCLC. PCR showed that ADCY4 expression was increased in NCI-H209 and NCI-H526 SCLC cell lines. In vitro experiments confirmed that the expression of ADCY4 was significantly decreased after anti-PD1 antibody treatment, while the expression of energy metabolism factors were significantly different. This study reveals a potential mechanism by which ADCY4 mediates poor prognosis through energy metabolism -related pathways in SCLC.
论文信息
- 作者
- Sun Y、Chen Y、Zhang X、Yi D、Kong F、Zhao L、Liao D、Chen L
- 第一作者单位
- Department of Oncology, First Teaching Hospital of Tianjin University of Traditional Chinese Medicine, Tianjin, 300382, China.China
- 通讯作者单位
- Centre for Precision Medicine Research and Training, Faculty of Health Sciences, University of Macau, Macau SAR, China.China
- 期刊
- Heliyon2024 Apr 15