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泛癌多组学分析乳酸化基因与肿瘤微环境和癌症发展的关联

英文原题:A pan-cancer multi-omics analysis of lactylation genes associated with tumor microenvironment and cancer development.

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A pan-cancer multi-omics analysis of lactylation genes associated with tumor microenvironment and cancer development.

PubMed 2024/03/03(内容时间) Heliyon

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研究概要

乳酸化基因参与恶性肿瘤形成。乳酸化评分可作为预测患者预后和免疫治疗疗效的有前景的生物标志物。

研究思路结论见上方概要

乳酰化是一种重要的翻译后修饰,连接了癌症表观遗传学与代谢重编程之间的空白。然而,乳酰化与多种癌症的预后、肿瘤微环境(TME)及药物治疗反应之间的关联仍不清楚。

首先,以泛癌方式系统探索了乳酸化基因的表达、预后价值以及遗传和表观遗传改变。使用单样本基因集富集分析(ssGSEA)算法为每个肿瘤得出乳酸化评分。通过整合多种计算方法评估了乳酸化评分与临床特征、预后和TME的相关性。此外,使用GSE135222数据评估了乳酸化评分在预测免疫治疗结局中的效能。通过RNA测序验证了乳腺癌和胶质瘤中乳酸化基因的表达。

乳酸化基因在大多数癌症类型中显著上调。泛癌分析中CREBBP和EP300表现出高突变率。乳酸化评分的预后影响因肿瘤类型而异,乳酸化评分是KIRC、ACC、READ、LGG和UVM的保护因素,是CHOL、DLBC、LAML和OV的风险因素。此外,高乳酸化评分与冷TME相关。在乳酸化评分较高的肿瘤中,CD8 + T、γδT、自然杀伤T细胞(NKT)和NK细胞的浸润水平较低。最后,乳酸化评分高的患者的免疫治疗疗效比其他类型更差。

展开英文摘要原文

Lactylation is a significant post-translational modification bridging the gap between cancer epigenetics and metabolic reprogramming. However, the association between lactylation and prognosis, tumor microenvironment (TME), and response to drug therapy in various cancers remains unclear.

First, the expression, prognostic value, and genetic and epigenetic alterations of lactylation genes were systematically explored in a pan-cancer manner. Lactylation scores were derived for each tumor using the single-sample gene set enrichment analysis (ssGSEA) algorithm. The correlation of lactylation scores with clinical features, prognosis, and TME was assessed by integrating multiple computational methods. In addition, GSE135222 data was used to assess the efficacy of lactylation scores in predicting immunotherapy outcomes. The expression of lactylation genes in breast cancers and gliomas were verified by RNA-sequencing.

Lactylation genes were significantly upregulated in most cancer types. CREBBP and EP300 exhibited high mutation rates in pan-cancer analysis. The prognostic impact of the lactylation score varied by tumor type, and lactylation score was a protective factor for KIRC, ACC, READ, LGG, and UVM, and a risk factor for CHOL, DLBC, LAML, and OV. In addition, a high lactylation score was associated with cold TME. The infiltration levels of CD8 + T, γδT, natural killer T cell (NKT), and NK cells were lower in tumors with higher lactylation scores. Finally, immunotherapy efficacy was worse in patients with high lactylation scores than other types.

Lactylation genes are involved in malignancy formation. Lactylation score serves as a promising biomarker for predicting patient prognosis and immunotherapy efficacy.

论文信息

作者
Wu Z、Wu H、Dai Y、Wang Z、Han H、Shen Y、Zhang R、Wang X
单位
Department of Burns and Skin Repair Surgery, The Third Affiliated Hospital of Wenzhou Medical University, Wenzhou, 325015, Zhejiang, People's Republic of China.China
期刊
Heliyon2024 Mar 15
原文标识
PubMed 38463768 · DOI 10.1016/j.heliyon.2024.e27465