← 返回前沿论文

通过生物信息学分析揭示胃癌中二硫死亡模式的诊断聚类和免疫景观

英文原题:Unravelling diagnostic clusters and immune landscapes of disulfidptosis patterns in gastric cancer through bioinformatic assay.

PubMed 2023/12/27(内容时间) Aging (Albany NY)

研究概要

二硫死亡是一种由SLC7A11诱导的二硫化物应激介导的新型细胞死亡方式。

中文摘要

二硫死亡是一种由 SLC7A11 诱导的二硫化物应激介导的新型细胞死亡。胃癌(GC)是一种常见的消化道恶性肿瘤。现有证据表明,SLC7A11 可调控细胞死亡并促进 GC 进展,提示二硫死亡可能存在于 GC 的病理过程中。然而,二硫死亡调控因子在 GC 中的潜在功能仍不清楚。我们筛选了 GSE54129 数据集,以全面研究 GC 中与二硫死亡相关的诊断聚类和免疫景观。通过 GC 样本与对照之间的差异分析,共鉴定出 15 个显著的二硫死亡调控因子。随后利用随机森林模型评估其重要性评分(平均下降 Gini)。接着构建了列线图模型,基于我们后续的决策曲线分析,该模型可为患者带来获益。根据显著的二硫死亡调控因子,借助共识聚类分析,将所有纳入的 GC 患者分为 2 个二硫死亡亚组(clusterA 和 clusterB)。通过 PCA 算法计算每个样本的二硫死亡评分,以量化二硫死亡亚型。clusterB 患者的二硫死亡评分低于 clusterA 患者。此外,我们发现 clusterB 中的病例与活化 CD4 T 细胞等免疫密切相关,而 clusterA 与未成熟树突状细胞、肥大细胞、自然杀伤 T 细胞、NK 细胞等相关,且其具有更高的二硫死亡评分。因此,二硫死亡调控因子在 GC 的病理过程中发挥重要作用,为未来 GC 治疗提供了一个有前景的标志物和一种免疫治疗策略。

展开英文摘要原文

Disulfidptosis is a novel type of cell death mediated by SLC7A11-induced disulfide stress. Gastric cancer (GC) is a common malignant gastrointestinal tumor. Existing evidence shows that SLC7A11 can regulate cell death and improve the progression of GC, suggesting disulfidptosis may exist in the pathological process of GC. However, the underlying functions of disulfidptosis regulators in GC remain unknown. The dataset of GSE54129 was screened to comprehensively investigate the disulfidptosis-related diagnostic clusters and immune landscapes in GC. Totally 15 significant disulfidptosis regulators were identified via difference analysis between GC samples and controls. Then random forest model was utilized to assess their importance score (mean decrease Gini). Then a nomogram model was constructed, which could offer benefit to patients based on our subsequent decision curve analysis. All the included GC patients were divided into 2 disulfidptosis subgroups (clusterA and clusterB) according to the significant disulfidptosis regulators in virtue of consensus clustering analysis. The disulfidptosis score of each sample was calculated through PCA algorithms to quantify the disulfidptosis subtypes. Patients from clusterB exhibited lower disulfidptosis scores than those of patients in clusterA. In addition, we found that the cases in clusterB were closely associated with the immunity of activated CD4 T cell, etc., while clusterA was linked to immature dendritic cell, mast cell, natural killer T cell, natural killer cell, etc., which has a higher disulfidptosis score. Therefore, disulfidptosis regulators play an important role in the pathological process of GC, providing a promising marker and an immunotherapeutic strategy for future GC therapy.

论文信息

作者
Zhang P、Chen Z、Lin X、Yu S、Yu X、Chen Z
单位
Guangzhou University of Chinese Medicine, Guangzhou 510405, China.China
文献类型
非美国政府资助研究
期刊
Aging2023 Dec 27
原文标识
PubMed 38154092 · DOI 10.18632/aging.205365