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建立表达神经节苷脂 GD2 的结外 NK/T 细胞淋巴瘤细胞系并进行 scRNA-seq 分析

英文原题:Establishment of ganglioside GD2-expressing extranodal NK/T-cell lymphoma cell line with scRNA-seq analysis.

PubMed 2023/11/27(内容时间) Exp Hematol Q2 · IF 2.7(JCR 2025)

研究概要

结外自然杀伤(NK)/T细胞淋巴瘤,鼻型(ENKL),以EB病毒感染和预后不良为特征。

中文摘要

结外自然杀伤(NK)/T细胞淋巴瘤,鼻型(ENKL),以EB病毒感染和预后不良为特征。我们从一名ENKL患者的骨髓细胞中建立了一株新的细胞系ENKL-J1。我们发现ENKL-J1细胞表达神经节苷脂GD2(GD2),并且靶向GD2的CAR-T 细胞对ENKL-J1细胞表现出细胞毒性,表明GD2可能是表达GD2的ENKL细胞的合适靶点。靶向下一代测序揭示ENKL-J1细胞中存在TP53和TET2变异。此外,ENKL-J1细胞的单细胞RNA测序显示致癌信号通路JAK-STAT、NF-κB和MAPK中基因表达水平高。与多药耐药(ABCC1)、肿瘤抑制(ATG5、CRYBG1、FOXO3、TP53、MGA)、抗凋亡(BCL2、BCL2L1)、免疫检查点(CD274、CD47)和表观遗传调控(DDX3X、EZH2、HDAC2/3)相关的基因也高表达。分子靶向药物eprenetapopt、tazemetostat和vorinostat在体外有效诱导ENKL-J1细胞凋亡。此外,靶向GD2的CAR-T 细胞在体内对ENKL-J1细胞表现出细胞毒性。这些发现不仅有助于理解ENKL的分子和基因组特征;它们还为晚期或复发ENKL患者提出了新的治疗选择。

展开英文摘要原文

Extranodal natural killer (NK)/T-cell lymphoma, nasal type (ENKL), is characterized by Epstein-Barr virus infection and poor prognosis. We established a novel cell line, ENKL-J1, from bone marrow cells of an ENKL patient. We found that ENKL-J1 cells express the ganglioside GD2 (GD2) and that GD2-directed chimeric antigen receptor T cells exhibit cytotoxicity against ENKL-J1 cells, indicating that GD2 would be a suitable target of GD2-expressing ENKL cells. Targeted next-generation sequencing revealed TP53 and TET2 variants in ENKL-J1 cells. Furthermore, single-cell RNA sequencing in ENKL-J1 cells showed high gene-expression levels in the oncogenic signaling pathways JAK-STAT, NF-κB, and MAPK. Genes related to multidrug resistance (ABCC1), tumor suppression (ATG5, CRYBG1, FOXO3, TP53, MGA), anti-apoptosis (BCL2, BCL2L1), immune checkpoints (CD274, CD47), and epigenetic regulation (DDX3X, EZH2, HDAC2/3) also were expressed at high levels. The molecular targeting agents eprenetapopt, tazemetostat, and vorinostat efficiently induced apoptosis in ENKL-J1 cells in vitro. Furthermore, GD2-directed chimeric antigen receptor T cells showed cytotoxicity against ENKL-J1 cells in vivo. These findings not only contribute to understanding the molecular and genomic characteristics of ENKL; they also suggest new treatment options for patients with advanced or relapsed ENKL.

论文信息

作者
Sato S、Ishii M、Tachibana K、Furukawa Y、Toyota T、Kinoshita S、Azusawa Y、Ando J
第一作者单位
Department of Hematology, Juntendo University School of Medicine, Bunkyo-ku, Tokyo, Japan.Japan
通讯作者单位
Department of Hematology, Juntendo University School of Medicine, Bunkyo-ku, Tokyo, Japan. Electronic address: m-ando@juntendo.ac.jp.Japan
文献类型
非美国政府资助研究
期刊
Experimental hematology2024 Feb
原文标识
PubMed 38029851 · DOI 10.1016/j.exphem.2023.11.006