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TP53 缺失诱导与 B-ALL 中 CAR-T 细胞耗竭加速相关的低黏附转录组特征

英文原题:TP53 deficiency induces a low-adhesion transcriptomic signature correlating with accelerated CAR-T cell exhaustion in B-ALL.

PubMed 2026/05/28(内容时间) Front Immunol Q1 · IF 7(JCR 2025)

研究概要

我们的体外研究结果表明,B-ALL 细胞中 TP53 缺失会下调黏附网络并损害免疫原性信号,这与 CAR-T 细胞耗竭加速相关。

中文摘要

背景:CAR-T 细胞疗法是治疗复发/难治性B细胞急性淋巴细胞白血病(R/R B-ALL)的强效手段。然而,携带TP53改变的患者复发率异常偏高,驱动这一耐药的肿瘤内在机制尚不清楚。 方法:研究采用CRISPR/Cas9构建同基因背景的TP53野生型和TP53敲除NALM-6 B-ALL细胞模型。通过体外共培养实验评估p53缺失对CD19 CAR-T细胞细胞毒性、增殖及耗竭的特异性影响,并通过RNA测序分析相关分子变化及适应性应答。 结果:体外实验显示,TP53缺陷B-ALL细胞对CAR-T介导的杀伤具有内在耐受性。与TP53缺失靶细胞共培养会降低CAR-T细胞扩增,抑制效应细胞因子分泌,并加速T细胞耗竭,表现为PD-1、TIM-3和LAG-3共表达。转录组分析发现,TP53缺陷诱导低黏附特征,其特点是包括ITGB1和LAMA5在内的核心细胞外基质(ECM)及细胞黏附基因协同下调。该转录特征提示细胞结构发生重塑,可能使CAR-T细胞缺乏形成稳定免疫突触(IS)所需的机械锚定。此外,在免疫压力下,TP53缺陷细胞无法激活IL-2/STAT5等免疫原性信号通路。 结论:我们的体外结果表明,B-ALL细胞TP53缺失会下调黏附网络并损害免疫原性信号传导,且与CAR-T细胞耗竭加速相关。这些转录组和细胞学观察提示TP53介导的黏附丧失可能与CAR-T耐药相关,仍需进一步体内验证及生物物理学研究。

展开英文摘要原文

BACKGROUND: Chimeric antigen receptor T-cell (CAR-T) therapy is a potent treatment for relapsed/refractory B-cell acute lymphoblastic leukemia (R/R B-ALL). However, patients harboring TP53 alterations experience disproportionately high relapse rates, and the underlying tumor-intrinsic mechanisms driving this resistance remain poorly understood. METHODS: We engineered isogenic TP53 -wildtype and TP53 -knockout NALM-6 B-ALL cell models using CRISPR/Cas9. The specific impact of p53 loss on CD19 CAR-T cell cytotoxicity, proliferation, and exhaustion was evaluated using in vitro co-culture assays. Associated molecular alterations and adaptive responses were profiled via RNA-sequencing (RNA-seq). RESULTS: In in vitro assays, TP53 -deficient B-ALL cells exhibited intrinsic resistance to CAR-T-mediated killing. Co-culturing with these TP53 -null targets reduced CAR-T cell expansion, suppressed effector cytokine secretion, and accelerated a T-cell exhaustion phenotype, indicated by the co-expression of PD-1, TIM-3, and LAG-3. Transcriptomic profiling revealed that TP53 deficiency induces a low-adhesion signature, characterized by the coordinated downregulation of core extracellular matrix (ECM) and cell adhesion genes, including ITGB1 and LAMA5 . This transcriptional profile suggests a structural remodeling that potentially deprives CAR-T cells of the mechanical anchoring requisite for establishing a stable immunological synapse (IS). Furthermore, TP53 -deficient cells failed to activate immunogenic signaling pathways, such as IL-2/STAT5, under immune pressure. CONCLUSIONS: Our in vitro findings indicate that TP53 deficiency in B-ALL cells downregulates adhesion networks and impairs immunogenic signaling, which correlates with accelerated CAR-T cell exhaustion. These transcriptomic and cellular observations suggest a potential link between TP53 -mediated adhesion loss and CAR-T resistance, warranting further in vivo validation and biophysical investigations.

论文信息

作者
Wang Y、Xue YJ、Jia YP、Lu AD、Zhang LP、Sui PP、Zeng HM
单位
Department of Pediatrics, Peking University People's Hospital, Peking University, Beijing, China.China
期刊
Frontiers in immunology2026
原文标识
PubMed 42292358 · DOI 10.3389/fimmu.2026.1842309