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整合转录组学与蛋白质组学验证确定 SLC35D3 为结直肠癌与神经内分泌癌的肿瘤选择性表面抗原

英文原题:Integrated transcriptomic and proteomic validation identifies SLC35D3 as a tumor-selective surface antigen for colorectal and neuroendocrine carcinomas.

PubMed 2026/04/15(内容时间) Biochem Biophys Rep Q3 · IF 3.3(JCR 2025)

研究概要

综合这些转录组学和蛋白质组学发现,SLC35D3被确立为一种肿瘤选择性表面抗原,在侵袭性恶性肿瘤中广泛表达,而在关键正常组织中几乎不表达,突显其作为结直肠癌和神经内分泌癌下一代ADC、TCE和CAR-T疗法的有前景的新候选靶点。

中文摘要

抗体-药物偶联物(ADCs)、双特异性T细胞衔接器(TCEs)和嵌合抗原受体(CAR)-T细胞需要真正肿瘤限制性的表面抗原来最小化靶向/脱靶毒性。为了鉴定此类抗原,我们查询了两个互补的RNA-seq资源:(i)涵盖多种正常组织的基因型-组织表达(GTEx)图谱和(ii)癌症基因组图谱结肠腺癌队列(TCGA-COAD)。候选膜蛋白转录本定义为GTEx中位表达低(所有正常组织中<1 RPKM)且在TCGA结肠肿瘤中显著上调(10倍)。只有两个基因符合这些严格标准,其中研究较少的核苷酸糖转运体SLC35D3成为首要候选。TCGA数据集的泛癌分析证实其在结直肠癌和嗜铬细胞瘤/副神经节瘤中选择性富集,而GTEx数据显示其在包括脑、心脏、肝脏、肺和肾脏在内的必需器官中表达接近背景水平。对超过250个组织微阵列核心进行免疫组化蛋白水平验证,显示SLC35D3在53%的结直肠癌、40%的小细胞肺癌和24%的胰腺神经内分泌肿瘤中呈阳性,而重要正常器官均为阴性。尽管SLC35D3被注释为主要定位于内质网和早期内体,我们的分析揭示其存在于质膜上,这一点通过流式细胞术在SLC35D3 mRNA阳性的癌细胞系中得到证实,而在阴性对照中则未观察到。综合这些转录组学和蛋白质组学发现,SLC35D3被确立为一种肿瘤选择性表面抗原,在侵袭性恶性肿瘤中广泛表达,而在关键正常组织中几乎不表达,突显其作为结直肠癌和神经内分泌癌下一代ADC、TCE和CAR-T疗法的有前景的新候选靶点。

展开英文摘要原文

Antibody-drug conjugates (ADCs), bispecific T-cell engagers (TCEs), and chimeric antigen receptor (CAR)-T cells require truly tumor-restricted surface antigens to minimize on-target/off-tumor toxicity. To identify such antigens, we interrogated two complementary RNA-seq resources: (i) the Genotype-Tissue Expression (GTEx) atlas spanning diverse normal tissues and (ii) the Cancer Genome Atlas colon adenocarcinoma cohort (TCGA-COAD). Candidate membrane-protein transcripts were defined by low median GTEx expression (<1 RPKM across all normal tissues) and marked upregulation ( 10-fold) in TCGA colon tumors. Only two genes met these stringent criteria, with the little-studied nucleotide-sugar transporter SLC35D3 emerging as the leading candidate. Pan-cancer analysis of the TCGA datasets confirmed its selective enrichment in colorectal carcinoma and in pheochromocytoma/paraganglioma, while GTEx data showed near-background expression in essential organs including brain, heart, liver, lung, and kidney. Protein-level validation with immunohistochemistry on > 250 tissue-microarray cores revealed SLC35D3 positivity in 53% of colorectal cancers, 40% of small-cell lung cancers, and 24% of pancreatic neuroendocrine tumors, whereas vital normal organs were uniformly negative. Although SLC35D3 has been annotated as mainly localized to the endoplasmic reticulum and early endosomes, our analyses revealed its presence on the plasma membrane, which was corroborated by flow cytometry in SLC35D3 mRNA-positive cancer cell lines but not in negative control. Taken together, these transcriptomic and proteomic findings establish SLC35D3 as a tumor-selective surface antigen broadly represented in aggressive malignancies yet virtually absent from critical normal tissues, highlighting it as a promising new candidate for next-generation ADCs, TCEs, and CAR-T therapies in colorectal and neuroendocrine carcinomas.

论文信息

作者
Someya S、Inoue T、Kawaida R、Ohtsuka T、Fukuchi K
单位
Daiichi Sankyo Co., Ltd., 1-2-58 Hiromachi, Shinagawa-ku, Tokyo, 140-8710, Japan.Italy
期刊
Biochemistry and biophysics reports2026 Jun
原文标识
PubMed 42023079 · DOI 10.1016/j.bbrep.2026.102587