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基于生物信息学分析的卵巢癌 CAR-T 治疗差异表达蛋白发现

英文原题:Discovery of differentially expressed proteins for CAR-T therapy of ovarian cancers with a bioinformatics analysis.

PubMed 2024/07/18(内容时间) Aging (Albany NY)

研究概要

靶抗原对于开发嵌合抗原受体(CAR)-T 细胞至关重要,但其在卵巢癌中的应用受到限制。

中文摘要

靶抗原是开发CAR-T的关键,但其在卵巢癌中的应用仍有限。本研究旨在寻找潜在的卵巢癌CAR-T抗原基因。研究分析四个GEO数据集中的卵巢癌差异表达基因,并开展功能注释、通路、蛋白定位、致癌性及网络分析。共鉴定153个差异基因,其中60个编码适合作为CAR-T靶点的质膜蛋白;21个被预测为卵巢癌致癌基因,其中9个在网络中作用关键。候选基因包括MUC1、CXCR4、EPCAM、RACGAP1、UBE2C、PRAME、SORT1、JUP和CLDN3。研究为卵巢癌免疫治疗潜在靶点提供了线索。

展开英文摘要原文

Target antigens are crucial for developing chimeric antigen receptor (CAR)-T cells, but their application to ovarian cancers is limited. This study aimed to identify potential genes as CAR-T-cell antigen candidates for ovarian cancers. A differential gene expression analysis was performed on ovarian cancer samples from four datasets obtained from the GEO datasets. Functional annotation, pathway analysis, protein localization, and gene expression analysis were conducted using various datasets and tools. An oncogenicity analysis and network analysis were also performed. In total, 153 differentially expressed genes were identified in ovarian cancer samples, with 60 differentially expressed genes expressing plasma membrane proteins suitable for CAR-T-cell antigens. Among them, 21 plasma membrane proteins were predicted to be oncogenes in ovarian cancers, with nine proteins playing crucial roles in the network. Key genes identified in the oncogenic pathways of ovarian cancers included MUC1 , CXCR4 , EPCAM , RACGAP1 , UBE2C , PRAME , SORT1 , JUP , and CLDN3 , suggesting them as recommended antigens for CAR-T-cell therapy for ovarian cancers. This study sheds light on potential targets for immunotherapy in ovarian cancers.

论文信息

作者
Anurogo D、Liu CL、Chang YC、Chang YH、Qiu JT
单位
International Ph.D. Program in Cell Therapy and Regenerative Medicine, College of Medicine, Taipei Medical University, Taipei 11031, Taiwan.Taiwan
期刊
Aging2024 Jul 18
原文标识
PubMed 39033780 · DOI 10.18632/aging.206024