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一种与弥漫性大 B 细胞淋巴瘤免疫抑制机制相关的新型基于脂质代谢的风险模型

英文原题:A novel lipid metabolism-based risk model associated with immunosuppressive mechanisms in diffuse large B-cell lymphoma.

PubMed 2024/01/22(内容时间) Lipids Health Dis Q1 · IF 6.9(JCR 2025)

研究概要

由16个脂质代谢相关基因衍生的风险水平模型是一种新颖、稳健的DLBCL预后生物标志物,可能具有免疫抑制作用。它可以弥补IPI评分在预测总生存期方面的局限性,具有潜在的临床应用价值。

研究思路结论见上方概要

弥漫性大B细胞淋巴瘤(DLBCL)所表现出的分子多样性是当前精准治疗面临的重大障碍。然而,使用国际预后指数(IPI)进行评分在全面预测DLBCL发展方面存在不足。脂质代谢重编程对DLBCL的癌变和扩展至关重要,而基于脂质代谢相关基因(LMAGs)的预测方法尚未在DLBCL中得到认可。

利用Gene Expression Omnibus (GEO)和The Cancer Genome Atlas (TCGA)数据库生成DLBCL的基因表达谱。采用LASSO Cox回归构建DLBCL患者的有效预测风险评分模型。采用Kaplan-Meier生存评估比较给定风险评分与IPI评分及其对DLBCL患者生存的影响。利用KEGG通路进行功能富集检查。通过单样本GSEA (ssGSEA)鉴定枢纽基因后,对对照组和DLBCL患者的淋巴结样本进行免疫组化染色和免疫荧光,以确认这些鉴定出的基因。

鉴定出16个与脂质代谢和生存相关的基因,用于构建预后风险评分方法。该模型在多个数据集中表现出稳健的性能,并成为预测DLBCL患者发展的独立危险因素。风险评分能够显著区分DLBCL患者的发展与低危和高危IPI分级。抑制性免疫相关通路的结果和较低的免疫评分提示高危组内存在免疫抑制表型。在高风险评分组中,鉴定出三个枢纽基因MECR、ARSK和RAN与活化的CD8 T细胞和自然杀伤T细胞呈负相关。最终确定,这三个基因在DLBCL患者的临床样本中由淋巴瘤细胞表达,而非由T细胞表达。

展开英文摘要原文

BACKGROUND: The molecular diversity exhibited by diffuse large B-cell lymphoma (DLBCL) is a significant obstacle facing current precision therapies. However, scoring using the International Prognostic Index (IPI) is inadequate when fully predicting the development of DLBCL. Reprogramming lipid metabolism is crucial for DLBCL carcinogenesis and expansion, while a predictive approach derived from lipid metabolism-associated genes (LMAGs) has not yet been recognized for DLBCL. METHODS: Gene expression profiles of DLBCL were generated using the Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA) databases. The LASSO Cox regression was used to construct an effective predictive risk-scoring model for DLBCL patients. The Kaplan-Meier survival assessment was employed to compare a given risk score with the IPI score and its impact on the survival of DLBCL patients. Functional enrichment examination was performed utilizing the KEGG pathway. After identifying hub genes via single-sample GSEA (ssGSEA), immunohistochemical staining and immunofluorescence were performed on lymph node samples from control and DLBCL patients to confirm these identified genes. RESULTS: Sixteen lipid metabolism- and survival-associated genes were identified to construct a prognostic risk-scoring approach. This model demonstrated robust performance over various datasets and emerged as an autonomous risk factor for predicting the development of DLBCL patients. The risk score could significantly distinguish the development of DLBCL patients from the low-risk and elevated-risk IPI classes. Results from the inhibitory immune-related pathways and lower immune scores suggested an immunosuppressive phenotype within the elevated-risk group. Three hub genes, MECR, ARSK, and RAN, were identified to be negatively correlated with activated CD8 T cells and natural killer T cells in the elevated-risk score class. Ultimately, it was determined that these three genes were expressed by lymphoma cells but not by T cells in clinical samples from DLBCL patients. CONCLUSION: The risk level model derived from 16 lipid metabolism-associated genes represents a prognostic biomarker for DLBCL that is novel, robust, and may have an immunosuppressive role. It can compensate for the limitations of the IPI score in predicting overall survival and has potential clinical application value.

论文信息

作者
Zhang Z、Zhao C、Yang S、Lu W、Shi J
第一作者单位
Department of Hematology, Shanghai Ninth People's Hospital, Shanghai Jiaotong University School of Medicine, Shanghai, China.China
通讯作者单位
Department of Hematology, Shanghai Ninth People's Hospital, Shanghai Jiaotong University School of Medicine, Shanghai, China. junshi@sjtu.edu.cn.China
期刊
Lipids in health and disease2024 Jan 22
原文标识
PubMed 38254162 · DOI 10.1186/s12944-024-02017-z